PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103047.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 213aa    MW: 24131.9 Da    PI: 6.6033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F ++  L  H++ H
  XP_009103047.1 59 FSCNYCRRKFYSSQALGGHQNAH 81
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-65687No hitNo description
PROSITE profilePS5015711.3855986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTESDDASRE LPVREEETLS NQDLSKPEAI IPVSLDLKLN DSFNDEQKGT KRESNPRVFS  60
CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMYMGRMFGH HHRPYTYSSS SLGMQAHSGL  120
LHHTLSQPQP PPPPLARFHQ QGYFGNTVPL FFDYDDGSDF FWPGSFRQVV EEVEAPMVVA  180
VTESGLDLNS VAANESVVDI NNNSRKPDLT LRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103047.11e-161PREDICTED: zinc finger protein 7-like
RefseqXP_013723578.11e-161PREDICTED: zinc finger protein 7-like
SwissprotQ392661e-122ZFP7_ARATH; Zinc finger protein 7
TrEMBLM4D7N61e-161M4D7N6_BRARP; Uncharacterized protein
STRINGBra012496.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139991725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.11e-108zinc finger protein 7